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Benchmarks
Cell Type Annotation on MS
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86.75
Accuracy
scANVI
67.51
72.505
77.5
82.495
Apr 22, 2025
Accuracy
Macro-F1
Updated 4d ago
Evaluation Results
Method
Method
Links
Accuracy
Macro-F1
scANVI
Tool=scvi-tools==1.1.0...
2025.04
86.75
74.24
Seurat
Version=R v4.4.0, Redu...
2025.04
86
73.35
scGPT
Training Setup=Supervi...
2025.04
84.71
66.3
scVI
Tool=scvi-tools==1.1.0...
2025.04
77.9
63.57
scFoundation
Training Setup=Supervi...
2025.04
77.63
68.12
GeneFormer
Training Setup=Supervi...
2025.04
76.5
62.2
HVG
Selected Genes=top 2,0...
2025.04
70.55
54.03
GeneMamba
Epochs=100, Batch size...
2025.04
68.25
53.42
GeneMamba
Training Setup=Supervi...
2025.04
68.25
53.42
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