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Named Entity Recognition on BC5CDR

93.5F1 Score

SOTA

Updated 13d ago

Evaluation Results

Method
SOTA 2020.08	93.5	-	-	-	-
Fully supervised BioBERT (FS) 2020.08	92.4	-	-	-	-
InstructUIE 2023.04	91.9	-	-	-	-
Weakly supervised BioBERT (WS) 2020.08	91.1	-	-	-	-
CL-L2 2021.05	90.99	-	-	-	-
CL-KL 2021.05	90.93	-	-	-	-
SpanDec (RoBERTa-L) 2026.04	90.8	-	-	-	-
W/ CONTEXT (Baseline) 2021.05	90.76	-	-	-	-
CL-KL 2021.05	90.73	-	-	-	-
CL-L2 2021.05	90.7	-	-	-	-
W/O CONTEXT (Baseline) 2021.05	90.52	-	-	-	-
GNER 2026.04	90.3	-	-	-	-
Nooralahzadeh et al. 2021.05	89.93	-	-	-	-
Spark-Biomedical 2020.11	89.73	-	-	-	-
InstructUIE 2023.04	89.59	-	-	-	-
Bio-Flair 2021.05	89.42	-	-	-	-
UniversalNER 2026.04	89.34	-	-	-	-
KnowCoder 2026.04	89.3	-	-	-	-
UniNER-7B 2026.04	89.3	-	-	-	-
KnowCoder-7B 2026.04	89.3	-	-	-	-
Label Model (LM) 2020.08	89.2	-	-	-	-
LUKE 2021.05	89.18	-	-	-	-
InstructUIE 2026.04	89.02	-	-	-	-
InstructUIE 2026.04	89	-	-	-	-
InstructUIE 2026.04	89	-	-	-	-
UniNER 2026.04	89	-	-	-	-
ProUIE 2026.04	88.93	-	-	-	-
Supervised BERT-NER 2021.05	88.81	87.12	90.57	-	-
GLiNER 2026.04	88.7	-	-	-	-
GLiNER 2026.04	88.7	-	-	-	-
B2NER 2024.11	88.52	-	-	-	-
Weakly supervised BioBERT (WS) 2020.08	88.5	-	-	-	-
B2NER 2026.04	88.5	-	-	-	-
KnowCoder-X 2024.11	88.46	-	-	-	-
GollIE 2026.04	88.4	-	-	-	-
Spark-GloVe6B 2020.11	88.32	-	-	-	-
Stanza 2020.11	88.08	-	-	-	-
IEPILE 2024.11	88.07	-	-	-	-
Label Model (LM) 2020.08	88	-	-	-	-
GollIE 2026.04	87.9	-	-	-	-
Bio-BERT 2021.05	87.7	-	-	-	-
best consensus 2021.05	87.58	100	77.89	-	-
GollIE 2026.04	87.5	-	-	-	-
RDANER 2021.01	87.38	-	-	-	-
SOTA 2020.08	87.2	-	-	-	-
SpERT 2021.01	86.65	-	-	-	-
GPT (Moderation) 2026.05	86	92	81	-	1,737
DyGIE++ 2021.01	85.44	-	-	-	-
BERT-base 2026.04	85.3	-	-	-	-
BERT 2024.11	85.28	-	-	-	-
Bert-base 2023.04	85.28	-	-	-	-
BERT-base 2026.04	85.28	-	-	-	-
CHMM-ALT 2021.05	85.12	84.97	85.28	-	-
GPT (Guideline) 2026.05	85	89	81	-	1,735
AutoNER 2021.01	84.8	-	-	-	-
Fully supervised BioBERT (FS) 2020.08	84.5	-	-	-	-
CHMM + BERT-NER 2021.05	84.33	85.58	83.12	-	-
SwellShark 2021.01	84.23	-	-	-	-
SwellShark (noun-phrase) 2021.05	84.23	84.98	83.49	-	-
SwellShark (hand-tuned) 2021.05	84.21	86.11	82.39	-	-
YAYI-UIE 2024.11	83.67	-	-	-	-
BOND-MV 2021.05	83.18	82.9	83.49	-	-
Linked HMM 2021.05	82.96	82.65	83.28	-	-
CHMM 2021.05	82.39	89.93	76.02	-	-
Snorkel 2021.05	82.24	80.23	84.35	-	-
AutoNER 2021.05	82.13	83.23	81.06	-	-
Majority Vote (MV) 2020.08	81.1	-	-	-	-
Majority Voting 2021.05	80.73	83.79	77.88	-	-
HMM 2021.05	80.57	88.75	73.76	-	-
GPT (Simple prompting) 2026.05	80	84	78	-	1,664
Weakly supervised BioBERT (WS) 2020.08	79.9	-	-	-	-
Majority Vote (MV) 2020.08	79.8	-	-	-	-
Label Model (LM) 2020.08	79.8	-	-	-	-
CHMM-i.i.d. 2021.05	79.37	85.68	73.92	-	-
Label Model (LM) 2020.08	78.9	-	-	-	-
DiZiNER 2026.04	78.9	-	-	-	-
DiZiNER 2026.04	78.9	-	-	-	-
Weakly supervised BioBERT (WS) 2020.08	78.3	-	-	-	-
MACE 2026.04	77.6	-	-	-	-
GLAD 2026.04	77.5	-	-	-	-
MV 2026.04	77.1	-	-	-	-
Gemini (Moderation) 2026.05	77	86	70	-	1,503
Majority Vote (MV) 2020.08	76.4	-	-	-	-
Gemini (Guideline) 2026.05	76	84	68	-	1,469
Majority Vote (MV) 2020.08	74.7	-	-	-	-
JPT-4B 2026.04	70.4	-	-	-	-
gliner_large-v2.5 2026.02	68.7	-	-	-	-
UniNER-7B 2026.04	68	-	-	-	-
Prior Best ZS 2026.04	68	-	-	-	-
UniNER-7B 2026.04	68	-	-	-	-
Gemini (Simple prompting) 2026.05	68	74	63	-	1,359
GLiNER-L 2026.04	66.4	-	-	-	-
GLiNER 2026.04	66.4	-	-	-	-
gliner_small-v2.5 2026.02	65.9	-	-	-	-
gliner_medium-v2.5 2026.02	65.9	-	-	-	-
DS 2026.04	65.9	-	-	-	-
DeepSeek (Moderation) 2026.05	65	86	52	-	1,119
DeepSeek (Guideline) 2026.05	64	89	50	-	1,072
GPT-5 mini 2026.04	62.8	-	-	-	-
GPT-5 mini 2026.04	62.8	-	-	-	-

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