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Benchmarks
Genomics Variant Calling on GIAB HG002 ONT
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86.4
Variant F1
QA-BPE-seq
74.544
77.622
80.7
83.778
Feb 6, 2026
Variant F1
Updated 4d ago
Evaluation Results
Method
Method
Links
Variant F1
QA-BPE-seq
Data Percentage=100%,...
2026.02
86.4
QA-BPE-seq
Data Percentage=70%, I...
2026.02
83
DNABERT-k (6-mer)
Inf. Time (ms/seq)=11.2
2026.02
82.3
SentencePiece
Inf. Time (ms/seq)=11.6
2026.02
80.1
WordPiece
Inf. Time (ms/seq)=11.5
2026.02
79.8
Standard BPE
Inf. Time (ms/seq)=11.5
2026.02
79.5
QA-BPE-seq
Data Percentage=50%, I...
2026.02
79.5
QA-BPE-seq
Data Percentage=30%, I...
2026.02
75
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