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Benchmarks
Next-Generation Sequencing Analysis on UHGG NGS
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91.5
Variant F1
QA-BPE-seq
78.5
81.875
85.25
88.625
Feb 6, 2026
Variant F1
Taxa F1
Reconstruction Loss
Updated 4d ago
Evaluation Results
Method
Method
Links
Variant F1
Taxa F1
Reconstruction Loss
QA-BPE-seq
Sampling rate=100%, In...
2026.02
91.5
93.5
0.221
QA-BPE-seq
Sampling rate=70%, Inf...
2026.02
87.8
89.8
0.25
DNABERT-k
k=6-mer, Inf. Time (ms...
2026.02
87.5
90.8
0.264
SentencePiece
Inf. Time (ms/seq)=9.9...
2026.02
86
89.3
0.28
WordPiece
Inf. Time (ms/seq)=9.8...
2026.02
85.5
88.7
0.286
Standard BPE
Inf. Time (ms/seq)=9.8...
2026.02
85.2
88.1
0.295
QA-BPE-seq
Sampling rate=50%, Inf...
2026.02
84.2
86
0.276
QA-BPE-seq
Sampling rate=30%, Inf...
2026.02
79
80.5
0.31
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