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Benchmarks
Sequence Reconstruction on GIAB HG002 ONT
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0.305
Recon Loss
QA-BPE-seq
0.3004
0.33145
0.3625
0.39355
Feb 6, 2026
Recon Loss
Updated 4d ago
Evaluation Results
Method
Method
Links
Recon Loss
QA-BPE-seq
Data Percentage=100%,...
2026.02
0.305
QA-BPE-seq
Data Percentage=70%, I...
2026.02
0.345
DNABERT-k (6-mer)
Inf. Time (ms/seq)=11.2
2026.02
0.352
SentencePiece
Inf. Time (ms/seq)=11.6
2026.02
0.371
WordPiece
Inf. Time (ms/seq)=11.5
2026.02
0.379
QA-BPE-seq
Data Percentage=50%, I...
2026.02
0.38
Standard BPE
Inf. Time (ms/seq)=11.5
2026.02
0.388
QA-BPE-seq
Data Percentage=30%, I...
2026.02
0.42
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