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Benchmarks
Taxonomic Classification on GIAB HG002 ONT
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0.881
Taxa Accuracy F1
QA-BPE-seq
0.75516
0.78783
0.8205
0.85317
Feb 6, 2026
Taxa Accuracy F1
Updated 4d ago
Evaluation Results
Method
Method
Links
Taxa Accuracy F1
QA-BPE-seq
Data Percentage=100%,...
2026.02
0.881
DNABERT-k (6-mer)
Inf. Time (ms/seq)=11.2
2026.02
0.846
QA-BPE-seq
Data Percentage=70%, I...
2026.02
0.845
SentencePiece
Inf. Time (ms/seq)=11.6
2026.02
0.825
WordPiece
Inf. Time (ms/seq)=11.5
2026.02
0.819
Standard BPE
Inf. Time (ms/seq)=11.5
2026.02
0.812
QA-BPE-seq
Data Percentage=50%, I...
2026.02
0.81
QA-BPE-seq
Data Percentage=30%, I...
2026.02
0.76
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